11295 (Tp_fungal_TRF2) regulator [Rayko]
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
11295 chr_19b_31 (Tp_fungal_TRF2) regulator [Rayko] 98607 100317 - regulator [Rayko]

Synonyms

NCBI ID Ensembl Genomes exon ID
7451804 Thaps11295.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0331

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0076
 0.36

Most Highly Correlated Transcripts

262803

syntaxin
0.8357

9449

hypothetical protein
0.8279

8258

CHD
0.8188

11296

(Tp_fungal_TRF3) regulator [Rayko]
0.818

22017

hypothetical protein
0.8127

263997

(APA1) Adaptin_N
0.8106

263599

COG3899
0.809

23780

hypothetical protein
0.807

25435

hypothetical protein
0.8053

262616

(MYB22)
0.8038

Conserved Domains

Not available

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 236129 Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003700 GO:0005634 GO:0006355 GO:0008270 -

GO:0003700

sequence-specific DNA binding transcription factor activity

Details: 
Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
GO Category: 
MF

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0006355

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP

GO:0008270

zinc ion binding

Details: 
Interacting selectively and non-covalently with zinc (Zn) ions.
GO Category: 
MF

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