11315 CAP10 superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
11315	chr_19c_29	CAP10 superfamily	67	2515	+	CAP10 superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7444419	Thaps11315.5, Thaps11315.4, Thaps11315.3, Thaps11315.2, Thaps11315.6, Thaps11315.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0330

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0065	0.48	0.0000029 0.0000057

Most Highly Correlated Transcripts

264679 Syja_N 0.9183	8518 hypothetical protein 0.9172	2942 hypothetical protein 0.9149	269100 S_TKc 0.9012	264072 (HSF43) HSF_DNA-bind superfamily 0.9003	12500 SNF2_N 0.8999
6294 hypothetical protein 0.8977	23954 hypothetical protein 0.8969	35381 hypothetical protein 0.8941	264937 hypothetical protein 0.8938

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
CAP10 superfamily		Putative lipopolysaccharide-modifying enzyme; Putative lipopolysaccharide-modifying enzyme.	-	77.8474	4.08E-16	373 - 499	superfamily	214773

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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