11354 hypothetical protein
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
11354 chr_19c_29 hypothetical protein 124843 129577 + hypothetical protein

Synonyms

NCBI ID Ensembl Genomes exon ID
7451836 Thaps11354.2, Thaps11354.3, Thaps11354.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0081

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0213
 0.25

Most Highly Correlated Transcripts

bd843

(bd843) NA
0.9588

bd439

(bd439) POLBc_alpha
0.9426

bd1214

(bd1214) KISc_C_terminal
0.9424

bd1983

(bd1983) RecA-like_NTPases superfamily
0.9377

bd950

(bd950) NA
0.9247

bd529

(bd529) SNF2_N
0.9233

bd890

(bd890) NA
0.9213

8748

Cnd1
0.9149

bd1081

(bd1081) NA
0.9131

29304

(TUB1) PLN00221
0.8988

Conserved Domains

Not available

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_49232 PHATRDRAFT_49232 240624 322941 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005622 GO:0000151 GO:0004842 GO:0008270 GO:0016567 GO:0003700 GO:0006355 GO:0004308 -

GO:0005622

intracellular

Details: 
The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO Category: 
CC

GO:0000151

ubiquitin ligase complex

Details: 
A protein complex that includes a ubiquitin-protein ligase and other proteins that may confer substrate specificity on the complex.
GO Category: 
CC

GO:0004842

ubiquitin-protein ligase activity

Details: 
Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine.
GO Category: 
MF

GO:0008270

zinc ion binding

Details: 
Interacting selectively and non-covalently with zinc (Zn) ions.
GO Category: 
MF

GO:0016567

protein ubiquitination

Details: 
The process in which one or more ubiquitin groups are added to a protein.
GO Category: 
BP

GO:0003700

sequence-specific DNA binding transcription factor activity

Details: 
Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
GO Category: 
MF

GO:0006355

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP

GO:0004308

exo-alpha-sialidase activity

Details: 
Catalysis of the hydrolysis of alpha-(2->3)-, alpha-(2->6)-, alpha-(2->8)-glycosidic linkages of terminal sialic residues in oligosaccharides, glycoproteins, glycolipids, colominic acid and synthetic substrates.
GO Category: 
MF

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