11442 Reprolysin_3Thalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
11442	chr_20	Reprolysin_3	115238	118731	-	Reprolysin_3

Synonyms

NCBI ID	Ensembl Genomes exon ID
7447816	Thaps11442.8, Thaps11442.11, Thaps11442.6, Thaps11442.10, Thaps11442.7, Thaps11442.4, Thaps11442.3, Thaps11442.5, Thaps11442.2, Thaps11442.1, Thaps11442.9

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0330

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0050	0.45

Most Highly Correlated Transcripts

bd737 (bd737) NA 0.937	bd690 (bd690) NA 0.9243	bd1801 (bd1801) NA 0.9114	bd738 (bd738) NA 0.9102	bd833 (bd833) NA 0.8797	bd1692 (bd1692) NA 0.8743
bd735 (bd735) NA 0.871	bd1851 (bd1851) NA 0.8707	bd1934 (bd1934) NA 0.8579	bd1840 (bd1840) NA 0.8535

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Reprolysin_3		Metallo-peptidase family M12B Reprolysin-like; This zinc-binding metallo-peptidase has the...	cl00064	75.8239	4.07E-16	286 - 386	specific	257898
ZnMc superfamily		Zinc-dependent metalloprotease. This super-family of metalloproteases contains two major branches,...	-	75.8239	4.07E-16	286 - 386	superfamily	260167

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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