11454 C2B_Copine
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
11454 chr_20 C2B_Copine 147548 148684 - C2B_Copine

Synonyms

NCBI ID Ensembl Genomes exon ID
7448497 Thaps11454.1, Thaps11454.3, Thaps11454.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0431

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0013
 0.47

Most Highly Correlated Transcripts

bd877

(bd877) NA
0.9171

bd1849

(bd1849) NA
0.9098

269624

TIM_phosphate_binding superfamily
0.8968

3715

hypothetical protein
0.875

3897

hypothetical protein
0.873

bd643

(bd643) NA
0.8721

11127

hypothetical protein
0.8633

37934

GRX_PICOT_like
0.8609

887

Bromodomain superfamily
0.8591

5339

hypothetical protein
0.8583

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
C2B_Copine C2 domain second repeat in Copine; There are 2 copies of the C2 domain present in copine, a protein... cl14603 86.4654 2.59E-21 168 - 272 specific 176012
C2 superfamily C2 domain; The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-... - 62.587 1.58E-12 2 - 146 superfamily 265430
C2 superfamily C2 domain; The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-... - 62.587 1.58E-12 2 - 146 superfamily 265430

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_46304 PHATRDRAFT_46304 Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

Add comment

Log in to post comments