11542 PseudoU_synth superfamilyThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
11542	chr_20	PseudoU_synth superfamily	418373	419734	+	PseudoU_synth superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7443370	Thaps11542.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0327

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0100	0.39	4.5 0.21

Most Highly Correlated Transcripts

36301 HMG-box 0.8276	10533 hypothetical protein 0.8203	23096 hypothetical protein 0.8077	37824 Peptidase_C1A 0.8057	22277 RdRP 0.7989	24852 hypothetical protein 0.7989
36650 hypothetical protein 0.7971	25417 hypothetical protein 0.7966	17492 COG1179 0.7955	4047 hypothetical protein 0.7954

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
PseudoU_synth superfamily		Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to...	-	160.332	8.08E-46	101 - 449	superfamily	260207
truA		tRNA pseudouridine synthase A; Validated	-	159.152	2.67E-45	98 - 449	multi-dom	234577

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0004730 GO:0008033 GO:0009982 GO:0016439 -

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