13156 (ACS1) AFD_class_I superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
13156 chr_1 (ACS1) AFD_class_I superfamily 1955611 1957647 - AFD_class_I superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7443152 Thaps13156.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0172

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0202
 0.30

Most Highly Correlated Transcripts

31829

CBS_like
0.9144

6594

hypothetical protein
0.9106

40655

PRK06349
0.9043

262207

Trp-synth-beta_II superfamily
0.904

bd1893

(bd1893) NA
0.9021

37838

M32_Taq
0.9018

36494

NBD_sugar-kinase_HSP70_actin superfamily
0.9017

5135

Rubis-subs-bind
0.9006

23341

hypothetical protein
0.8997

1383

(PDS1) phytoene_desat
0.8973

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
AFD_class_I superfamily Adenylate forming domain, Class I; This family includes acyl- and aryl-CoA ligases, as well as the... - 584.51 0 71 - 672 superfamily 266508
PLN02387 long-chain-fatty-acid-CoA ligase family protein - 473.45 2.87E-157 2 - 675 multi-dom 215217

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_20143 PHATRDRAFT_20143 173378 322429 353558 Not available AT2G04350.2 Not available

KEGG

KEGG description KEGG Pathway
Peroxisome map04146

GO Terms

GO:0003824 GO:0008152 GO:0004467 -

GO:0003824

catalytic activity

Details: 
Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO Category: 
MF

GO:0008152

metabolic process

Details: 
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO Category: 
BP

GO:0004467

long-chain fatty acid-CoA ligase activity

Details: 
Catalysis of the reaction: ATP + a long-chain carboxylic acid + CoA = AMP + diphosphate + an acyl-CoA; a long-chain fatty acid is a fatty acid with a chain length between C13 and C22.
GO Category: 
MF

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