40655 PRK06349
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
40655 chr_5 PRK06349 470195 471723 + PRK06349

Synonyms

NCBI ID Ensembl Genomes exon ID
7449696 Thaps40655.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0007

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0231
 0.32

Most Highly Correlated Transcripts

31829

CBS_like
0.9296

13156

(ACS1) AFD_class_I superfamily
0.9043

17214

PLN02512
0.9006

261422

(MAP4) MetAP1
0.892

5098

hypothetical protein
0.8909

268592

VDE superfamily
0.8906

6757

hypothetical protein
0.8898

1383

(PDS1) phytoene_desat
0.8887

262207

Trp-synth-beta_II superfamily
0.8883

5135

Rubis-subs-bind
0.8881

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine... cl09141 60.6072 1.40E-11 380 - 458 specific 153153
ACT superfamily ACT domains are commonly involved in specifically binding an amino acid or other small ligand... - 60.6072 1.40E-11 380 - 458 superfamily 263730
Homoserine_dh superfamily Homoserine dehydrogenase; Homoserine dehydrogenase. - 215.776 1.80E-67 173 - 352 superfamily 250099
Homoserine_dh superfamily Homoserine dehydrogenase; Homoserine dehydrogenase. - 215.776 1.80E-67 173 - 352 superfamily 250099
PRK06349 homoserine dehydrogenase; Provisional - 403.684 5.04E-137 54 - 458 multi-dom 235783

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_26813 PHATRDRAFT_26813 273694 67860 427030 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004412 GO:0008652 GO:0008152 GO:0016597 -

GO:0004412

homoserine dehydrogenase activity

Details: 
Catalysis of the reaction: L-homoserine + NADP+ = L-aspartate-4-semialdehyde + NADPH + H+.
GO Category: 
MF

GO:0008652

cellular amino acid biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents.
GO Category: 
BP

GO:0008152

metabolic process

Details: 
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO Category: 
BP

GO:0016597

amino acid binding

Details: 
Interacting selectively and non-covalently with an amino acid, organic acids containing one or more amino substituents.
GO Category: 
MF

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