13653 TCP1_etaThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
13653	chr_6	TCP1_eta	637177	639223	-	TCP1_eta

Synonyms

NCBI ID	Ensembl Genomes exon ID
7443570	Thaps13653.3, Thaps13653.1, Thaps13653.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0290

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0114	0.48	0.0000000000017 0.0046

Most Highly Correlated Transcripts

8573 hypothetical protein 0.838	10140 hypothetical protein 0.8032	2060 hypothetical protein 0.799	bd1133 (bd1133) ATM1 0.7947	37240 LRR_9 0.7905	262580 AdoMet_dc 0.789
8507 hypothetical protein 0.7863	263072 PcnB 0.7861	15858 galactose_mutarotase_like 0.7839	262616 (MYB22) 0.7783

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
TCP1_eta		TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in...	cl02777	920.915	0	10 - 534	specific	239456
chaperonin_like superfamily		chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share...	-	920.915	0	10 - 534	superfamily	261443
groEL		chaperonin GroEL; Reviewed	-	72.4669	9.90E-14	35 - 540	multi-dom	171770

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_37131	PHATRDRAFT_37131	265760	247534	454161	Cre01.g026550.t1.1	AT3G11830.1	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0005515 GO:0005524 GO:0044267 -

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