37240 LRR_9Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
37240	chr_13	LRR_9	618417	619697	-	LRR_9

Synonyms

NCBI ID	Ensembl Genomes exon ID
7447839	Thaps37240.1, Thaps37240.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0272

Most Highly Correlated Transcripts

8940 hypothetical protein 0.8548	8433 TFSII 0.8449	17468 CK_II_beta 0.8443	262616 (MYB22) 0.8439	12836 EEP superfamily 0.8379	263554 SK 0.8254
32211 G10 0.8245	263072 PcnB 0.8191	19743 Sm_D3 0.8174	12899 AAA 0.8141

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
LRR_9		Leucine-rich repeat; Leucine-rich repeat.	-	148.956	1.14E-43	1 - 162	multi-dom	258718

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_12161	PHATRDRAFT_12161	181319	195603	249152	Cre16.g679600.t1.2	AT1G09760.1	552970

KEGG

KEGG description	KEGG Pathway
Spliceosome	map03040

GO Terms

Not available -

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