13806 PRK05347
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
13806 chr_6 PRK05347 1407072 1409270 - PRK05347

Synonyms

NCBI ID Ensembl Genomes exon ID
7453292 Thaps13806.2, Thaps13806.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0043

Most Highly Correlated Transcripts

264556

FBPase
0.9051

13393

PLN02321
0.9001

4524

DHQS
0.8968

261047

Mito_carr
0.8667

267979

HCO3_cotransp superfamily
0.8432

36007

Aldolase_II superfamily
0.8417

38964

Chorismate_synthase
0.8344

16295

FBPase
0.829

16114

PLN02350
0.8278

261400

NA
0.8236

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
nt_trans superfamily nucleotidyl transferase superfamily; nt_trans (nucleotidyl transferase) This superfamily includes... - 333.835 3.02E-109 83 - 402 superfamily 260139
tRNA-synt_1c_C superfamily tRNA synthetases class I (E and Q), anti-codon binding domain; Other tRNA synthetase sub-families... - 153.187 5.91E-43 402 - 596 superfamily 252270
tRNA-synt_1c_C superfamily tRNA synthetases class I (E and Q), anti-codon binding domain; Other tRNA synthetase sub-families... - 153.187 5.91E-43 402 - 596 superfamily 252270
PRK05347 glutaminyl-tRNA synthetase; Provisional - 609.027 0 80 - 620 multi-dom 235424

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_27385 PHATRDRAFT_27385 182520 189511 414809 Cre14.g614900.t1.2 AT1G25350.1 556175

KEGG

KEGG description KEGG Pathway
Metabolic pathways map01100

GO Terms

GO:0004818 GO:0005524 GO:0006424 GO:0004812 GO:0006418 GO:0004819 -

GO:0004818

glutamate-tRNA ligase activity

Details: 
Catalysis of the reaction: ATP + L-glutamate + tRNA(Glu) = AMP + diphosphate + L-glutamyl-tRNA(Glu).
GO Category: 
MF

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0006424

glutamyl-tRNA aminoacylation

Details: 
The process of coupling glutamate to glutamyl-tRNA, catalyzed by glutamyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'- adenosine residue of the tRNA.
GO Category: 
BP

GO:0004812

aminoacyl-tRNA ligase activity

Details: 
Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.
GO Category: 
MF

GO:0006418

tRNA aminoacylation for protein translation

Details: 
The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis.
GO Category: 
BP

GO:0004819

glutamine-tRNA ligase activity

Details: 
Catalysis of the reaction: ATP + L-glutamine + tRNA(Gln) = AMP + diphosphate + L-glutaminyl-tRNA(Gln).
GO Category: 
MF

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