1393 (CAP1) Smc
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
1393 chr_1 (CAP1) Smc 1392750 1396924 + Smc

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0082

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0277
 0.16

Most Highly Correlated Transcripts

bd1983

(bd1983) RecA-like_NTPases superfamily
0.9861

7100

Condensin2nSMC
0.9805

4607

hypothetical protein
0.9742

7092

DOMON_DOH
0.9726

bd1173

(bd1173) S_TKc
0.9725

7586

MAP65_ASE1
0.9716

bd950

(bd950) NA
0.9697

10832

hypothetical protein
0.9669

bd439

(bd439) POLBc_alpha
0.9662

33883

CYCLIN
0.9632

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ABC_SMC2_euk ATP-binding cassette domain of eukaryotic SMC2 proteins; The structural maintenance of chromosomes... cl17201 309.228 2.72E-96 1 - 156 specific 213240
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 176.334 4.23E-49 1076 - 1170 superfamily 266551
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 176.334 4.23E-49 1076 - 1170 superfamily 266551
SMC_hinge SMC proteins Flexible Hinge Domain; This entry represents the hinge region of the SMC (Structural... cl05797 108.472 4.37E-27 523 - 642 specific 214944
SMC_hinge superfamily SMC proteins Flexible Hinge Domain; This family represents the hinge region of the SMC (Structural... - 108.472 4.37E-27 523 - 642 superfamily 262671
Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] - 509.256 2.27E-159 1 - 1169 multi-dom 224117

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_30352 PHATRDRAFT_30352 175250 191984 465321 Cre02.g086650.t1.2 AT5G62410.1 554108

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005524 GO:0005694 GO:0051276 GO:0016887 GO:0005515 -

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0005694

chromosome

Details: 
A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information.
GO Category: 
CC

GO:0051276

chromosome organization

Details: 
A process that is carried out at the cellular level that results in the assembly, arrangement of constituent parts, or disassembly of chromosomes, structures composed of a very long molecule of DNA and associated proteins that carries hereditary information.
GO Category: 
BP

GO:0016887

ATPase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
GO Category: 
MF

GO:0005515

protein binding

Details: 
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
GO Category: 
MF

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