14147 PRK08198
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
14147 chr_5 PRK08198 1380608 1382359 + PRK08198

Synonyms

NCBI ID Ensembl Genomes exon ID
7453205 Thaps14147.2, Thaps14147.1, Thaps14147.4, Thaps14147.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0033

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0059
 0.44

Most Highly Correlated Transcripts

9903

(Tp_bZIP24b) regulator [Rayko]
0.9204

22208

COG0075
0.9182

31169

PRX_BCP
0.8763

263714

LPLAT_GPAT
0.8691

2792

hypothetical protein
0.8691

26991

GRX_GRXh_1_2_like
0.8676

28326

lytB_ispH
0.8586

269147

NAD_binding_8 superfamily
0.858

6140

hypothetical protein
0.8566

262553

Voltage_gated_ClC
0.8545

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen.... cl00342 359.879 5.16E-121 87 - 398 specific 107205
Trp-synth-beta_II superfamily Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-... - 359.879 5.16E-121 87 - 398 superfamily 260370
ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other... cl09141 76.0426 4.14E-17 419 - 491 specific 153158
ACT superfamily ACT domains are commonly involved in specifically binding an amino acid or other small ligand... - 76.0426 4.14E-17 419 - 491 superfamily 263730
PRK08198 threonine dehydratase; Provisional - 405.296 2.66E-137 82 - 491 multi-dom 236182

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_19518 PHATRDRAFT_19518 188279 237879 429609 Not available Not available 285157

KEGG

KEGG description KEGG Pathway
Biosynthesis of secondary metabolites map01110

GO Terms

GO:0003824 GO:0008152 GO:0004794 -

GO:0003824

catalytic activity

Details: 
Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO Category: 
MF

GO:0008152

metabolic process

Details: 
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO Category: 
BP

GO:0004794

L-threonine ammonia-lyase activity

Details: 
Catalysis of the reaction: L-threonine = 2-oxobutanoate + NH3.
GO Category: 
MF

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