263714 LPLAT_GPATThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
263714	chr_10	LPLAT_GPAT	883945	885146	-	LPLAT_GPAT

Synonyms

NCBI ID	Ensembl Genomes exon ID
Not available	Thaps263714.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0014

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0239	0.34	160 920

Most Highly Correlated Transcripts

270373 hypothetical protein 0.9811	262553 Voltage_gated_ClC 0.92	9352 LrgB superfamily 0.8919	21348 hypothetical protein 0.8899	33701 DUF4079 0.8869	10185 hypothetical protein 0.8861
8737 hypothetical protein 0.8856	25867 5_nucleotid superfamily 0.8829	4871 hypothetical protein 0.8817	23341 hypothetical protein 0.8793

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
LPLAT_GPAT		Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: GPAT;...	cl17185	359.445	2.21E-123	198 - 400	specific	153247
LPLAT superfamily		Lysophospholipid acyltransferases (LPLATs) of glycerophospholipid biosynthesis; Lysophospholipid...	-	359.445	2.21E-123	198 - 400	superfamily	266537

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_3262	PHATRDRAFT_3262	158787	152459	455833	Cre02.g143000.t1.2	AT1G32200.2	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0008152 GO:0008415 -

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