14643 PLN02275
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
14643 chr_8 PLN02275 770233 771819 - PLN02275

Synonyms

NCBI ID Ensembl Genomes exon ID
7449816 Thaps14643.3, Thaps14643.2, Thaps14643.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0193

Most Highly Correlated Transcripts

264556

FBPase
0.9217

16295

FBPase
0.8973

261400

NA
0.8951

4524

DHQS
0.8855

2317

Mito_carr
0.8849

30701

PRK05279
0.8842

2023

HA
0.8823

13393

PLN02321
0.8814

264598

AAA
0.8789

7564

DUF547
0.8778

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Glycosyltransferase_GTB_type superfamily Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to... - 438.586 9.49E-151 10 - 462 superfamily 263942
PLN02275 transferase, transferring glycosyl groups - 544.653 0 8 - 426 multi-dom 215155

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_14002 PHATRDRAFT_14002 273942 326803 Not available Cre12.g516550.t1.2 AT1G16570.1 554865

KEGG

KEGG description KEGG Pathway
Metabolic pathways map01100

GO Terms

GO:0003677 GO:0005634 GO:0004578 -

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0004578

chitobiosyldiphosphodolichol beta-mannosyltransferase activity

Details: 
Catalysis of the reaction: GDP-mannose + chitobiosyldiphosphodolichol = GDP + beta-D-mannosylchitobiosyldiphosphodolichol.
GO Category: 
MF

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