14727 COG4770
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
14727 chr_8 COG4770 140022 143208 + COG4770

Synonyms

NCBI ID Ensembl Genomes exon ID
7452412 Thaps14727.3, Thaps14727.2, Thaps14727.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0405

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0055
 0.46

Most Highly Correlated Transcripts

269100

S_TKc
0.9058

5321

CobN-Mg_chel superfamily
0.9028

4908

hypothetical protein
0.8851

35410

Transglut_core
0.8835

22258

PUB
0.8832

34795

Cas1_AcylT superfamily
0.8824

7299

hypothetical protein
0.8808

5858

hypothetical protein
0.8783

23952

hypothetical protein
0.8782

263963

Adaptin_N
0.8766

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-... cl11404 82.0787 1.42E-18 535 - 601 specific 133459
Biotinyl_lipoyl_domains superfamily Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the... - 82.0787 1.42E-18 535 - 601 superfamily 264355
ATP-grasp_4 superfamily ATP-grasp domain; This family includes a diverse set of enzymes that possess ATP-dependent... - 227.57 2.07E-68 165 - 380 superfamily 266590
CPSase_L_chain superfamily Carbamoyl-phosphate synthase L chain, N-terminal domain; Carbamoyl-phosphate synthase catalyses the... - 126.059 1.71E-33 52 - 159 superfamily 249744
CPSase_L_chain superfamily Carbamoyl-phosphate synthase L chain, N-terminal domain; Carbamoyl-phosphate synthase catalyses the... - 126.059 1.71E-33 52 - 159 superfamily 249744
Biotin_carb_C superfamily Biotin carboxylase C-terminal domain; Biotin carboxylase is a component of the acetyl-CoA... - 101.01 9.09E-25 395 - 501 superfamily 263607
COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism] - 467.154 7.68E-152 53 - 603 multi-dom 227111

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005524 GO:0008152 GO:0016874 GO:0004086 GO:0004485 -

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0008152

metabolic process

Details: 
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO Category: 
BP

GO:0016874

ligase activity

Details: 
Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.
GO Category: 
MF

GO:0004086

NA

Details: 
NA
GO Category: 
NA

GO:0004485

methylcrotonoyl-CoA carboxylase activity

Details: 
Catalysis of the reaction: 3-methylbut-2-enoyl-CoA + ATP + bicarbonate = trans-3-methylglutaconyl-CoA + ADP + 2 H(+) + phosphate.
GO Category: 
MF

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