15226 PLN02407
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
15226 chr_1 PLN02407 2657877 2659160 - PLN02407

Synonyms

NCBI ID Ensembl Genomes exon ID
7445097 Thaps15226.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0082

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0241
 0.29

Most Highly Correlated Transcripts

bd439

(bd439) POLBc_alpha
0.9678

bd843

(bd843) NA
0.9296

4688

hypothetical protein
0.9277

bd1893

(bd1893) NA
0.9257

bd1983

(bd1983) RecA-like_NTPases superfamily
0.9248

bd950

(bd950) NA
0.9191

35387

(cdc2) PKc_like superfamily
0.9177

36441

CYCLIN
0.9175

7092

DOMON_DOH
0.9161

bd1214

(bd1214) KISc_C_terminal
0.9159

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PLN02407 superfamily diphosphomevalonate decarboxylase - 581.366 0 18 - 363 superfamily 178029
PLN02407 superfamily diphosphomevalonate decarboxylase - 581.366 0 18 - 363 superfamily 178029
mevDPdecarb diphosphomevalonate decarboxylase; This enzyme catalyzes the last step in the synthesis of... - 252.178 3.29E-80 21 - 351 multi-dom 130307

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_bd1325 PHATRDRAFT_bd1325 198850 54020 445262 Not available AT2G38700.1 500398

KEGG

KEGG description KEGG Pathway
Biosynthesis of secondary metabolites map01110

GO Terms

GO:0004163 GO:0008299 GO:0005524 GO:0016301 GO:0016310 -

GO:0004163

diphosphomevalonate decarboxylase activity

Details: 
Catalysis of the reaction: (R)-5-diphosphomevalonate + ATP = ADP + CO(2) + H(+) + isopentenyl diphosphate + phosphate.
GO Category: 
MF

GO:0008299

isoprenoid biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues.
GO Category: 
BP

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0016301

kinase activity

Details: 
Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
GO Category: 
MF

GO:0016310

phosphorylation

Details: 
The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
GO Category: 
BP

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