1620 S2P-M50 superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
1620 chr_1 S2P-M50 superfamily 2002124 2004416 + S2P-M50 superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7443162 Thaps1620.1, Thaps1620.2, Thaps1620.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0054

Most Highly Correlated Transcripts

bd1765

(bd1765) NA
0.9399

bd1078

(bd1078) NA
0.9189

bd218

(bd218) Chloroa_b-bind superfamily
0.9105

bd672

(bd672) NA
0.9091

bd624

(bd624) Glyco_transf_34 superfamily
0.9052

bd1160

(bd1160) Chloroa_b-bind superfamily
0.9032

bd1820

(bd1820) Fasciclin
0.9028

33072

Sec1
0.9003

bd1766

(bd1766) NA
0.8972

2186

ERG4_ERG24 superfamily
0.895

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
S2P-M50 superfamily Site-2 protease (S2P) class of zinc metalloproteases (MEROPS family M50) cleaves transmembrane... - 76.1146 8.64E-16 476 - 676 superfamily 245232

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available 228517 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004222 GO:0006508 -

GO:0004222

metalloendopeptidase activity

Details: 
Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
GO Category: 
MF

GO:0006508

proteolysis

Details: 
The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
GO Category: 
BP

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