33072 Sec1
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
33072 chr_3 Sec1 1583947 1586119 + Sec1

Synonyms

NCBI ID Ensembl Genomes exon ID
7451313 Thaps33072.1, Thaps33072.3, Thaps33072.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0177

Most Highly Correlated Transcripts

12836

EEP superfamily
0.9053

10881

hypothetical protein
0.902

1620

S2P-M50 superfamily
0.9003

263994

Adaptin_N
0.8967

23474

hypothetical protein
0.8928

13448

Sec1
0.8919

2186

ERG4_ERG24 superfamily
0.8905

7627

SPRY
0.89

263997

(APA1) Adaptin_N
0.8894

21257

hypothetical protein
0.8849

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Sec1 Sec1 family; Sec1 family. cl15415 405.477 3.04E-133 59 - 644 specific 250279
Sec1 superfamily Sec1 family; Sec1 family. - 405.477 3.04E-133 59 - 644 superfamily 265693

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
31145 PHATRDRAFT_43202 PHATRDRAFT_43202 178188 68285 439145 Cre12.g521350.t1.2 AT2G17980.1 483391

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0006904 GO:0016192 -

GO:0006904

vesicle docking involved in exocytosis

Details: 
The initial attachment of a vesicle membrane to a target membrane, mediated by proteins protruding from the membrane of the vesicle and the target membrane, that contributes to exocytosis.
GO Category: 
BP

GO:0016192

vesicle-mediated transport

Details: 
A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.
GO Category: 
BP

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