16722 ABC_subfamily_A
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
16722 chr_20 ABC_subfamily_A 694004 695150 + ABC_subfamily_A

Synonyms

NCBI ID Ensembl Genomes exon ID
7447780 Thaps16722.2, Thaps16722.3, Thaps16722.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0392

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0031
 0.36

Most Highly Correlated Transcripts

24098

hypothetical protein
0.8742

263610

COG3899
0.8648

15328

Solute_trans_a
0.8594

21515

hypothetical protein
0.8571

263599

COG3899
0.8565

22953

hypothetical protein
0.8547

10661

hypothetical protein
0.8506

12836

EEP superfamily
0.8479

24580

hypothetical protein
0.8415

268373

hypothetical protein
0.8411

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ABC_subfamily_A ATP-binding cassette domain of the lipid transporters, subfamily A; The ABCA subfamily mediates the... cl17201 251.655 2.48E-82 87 - 311 specific 213230
ABC_ATPase superfamily ATP-binding cassette transporter nucleotide-binding domain; ABC transporters are a large family of... - 251.655 2.48E-82 87 - 311 superfamily 266551
DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and... - 110.817 1.95E-28 91 - 333 multi-dom 224049

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
39973 PHATRDRAFT_15212 PHATRDRAFT_15212 Not available Not available 449089 Cre14.g618400.t1.2 AT3G47780.1 562706

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005524 GO:0016887 GO:0000166 GO:0017111 -

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0016887

ATPase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
GO Category: 
MF

GO:0000166

nucleotide binding

Details: 
Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
GO Category: 
MF

GO:0017111

nucleoside-triphosphatase activity

Details: 
Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate.
GO Category: 
MF

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