1725 LCM
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
1725 chr_1 LCM 2264909 2267120 - LCM

Synonyms

NCBI ID Ensembl Genomes exon ID
7447641 Thaps1725.1, Thaps1725.4, Thaps1725.3, Thaps1725.2, Thaps1725.5

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0129

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0010
 0.38

Most Highly Correlated Transcripts

bd870

(bd870) LRR_RI superfamily
0.8536

20975

hypothetical protein
0.8371

9650

hypothetical protein
0.814

7029

SET
0.8132

10078

hypothetical protein
0.8127

4333

hypothetical protein
0.8117

1101

hypothetical protein
0.8092

3179

WD40 superfamily
0.8058

3866

hypothetical protein
0.8034

3206

CAP10 superfamily
0.8019

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
LCM Leucine carboxyl methyltransferase; Family of leucine carboxyl methyltransferases EC:2.1.1.-. This... cl01306 108.473 4.83E-27 366 - 500 specific 252349
LCM superfamily Leucine carboxyl methyltransferase; Family of leucine carboxyl methyltransferases EC:2.1.1.-. This... - 108.473 4.83E-27 366 - 500 superfamily 260876

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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