17312 PLN02664
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
17312 chr_5 PLN02664 219955 221126 - PLN02664

Synonyms

NCBI ID Ensembl Genomes exon ID
7448466 Thaps17312.2, Thaps17312.3, Thaps17312.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0468

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0023
 0.43

Most Highly Correlated Transcripts

41636

PolY_Pol_IV_kappa
0.8716

11480

PKc
0.8609

5653

hypothetical protein
0.8602

2004

hypothetical protein
0.8473

6922

hypothetical protein
0.8455

10934

Adenylation_DNA_ligase_like superfamily
0.8373

27813

Hid1 superfamily
0.8355

12899

AAA
0.8349

10581

Peptidase_C54 superfamily
0.833

268929

PLN02885
0.8328

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of... cl18948 191.235 1.12E-59 28 - 241 specific 119339
crotonase-like superfamily Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of... - 191.235 1.12E-59 28 - 241 superfamily 267301
PLN02664 enoyl-CoA hydratase/delta3,5-delta2,4-dienoyl-CoA isomerase - 203.21 2.94E-63 34 - 302 multi-dom 178269

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_28497 PHATRDRAFT_28497 180456 302611 Not available Cre10.g463150.t1.1 AT5G43280.1 508840

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003824 GO:0008152 GO:0000247 GO:0008416 GO:0016863 GO:0018842 -

GO:0003824

catalytic activity

Details: 
Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO Category: 
MF

GO:0008152

metabolic process

Details: 
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO Category: 
BP

GO:0000247

C-8 sterol isomerase activity

Details: 
Catalysis of the reaction which results in unsaturation at C-7 in the B ring of sterols.
GO Category: 
MF

GO:0008416

delta5-delta2,4-dienoyl-CoA isomerase activity

Details: 
Catalysis of the isomerization of 3,5-dienoyl-CoA to 2,4-dienoyl-CoA.
GO Category: 
MF

GO:0016863

intramolecular oxidoreductase activity, transposing C=C bonds

Details: 
Catalysis of an oxidation-reduction (redox) reaction in which the hydrogen donor and acceptor are the same molecule, one or more carbon-carbon double bonds in the molecule are rearranged, and no oxidized product appears.
GO Category: 
MF

GO:0018842

3-carboxymuconate cycloisomerase type II activity

Details: 
Catalysis of the reaction: 3-sulfomuconate = 4-sulfolactone.
GO Category: 
MF

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