18795 (Tp_Myb3R7) SANT
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
18795 chr_15 (Tp_Myb3R7) SANT 84898 86554 + SANT

Synonyms

NCBI ID Ensembl Genomes exon ID
7444004 Thaps18795.2, Thaps18795.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0080

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0099
 0.44

Most Highly Correlated Transcripts

11377

hypothetical protein
0.8987

34403

KISc_KIF2_like
0.8891

bd1173

(bd1173) S_TKc
0.8853

bd1983

(bd1983) RecA-like_NTPases superfamily
0.8717

bd950

(bd950) NA
0.8614

bd856

(bd856) NA
0.8577

12140

hypothetical protein
0.8472

bd1081

(bd1081) NA
0.8366

14707

Motor_domain superfamily
0.8354

36420

PLN03128
0.832

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain... cl17250 68.371 1.48E-14 24 - 68 specific 238096
SANT superfamily 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain... - 68.371 1.48E-14 24 - 68 superfamily 266586

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Cre09.g399067.t1.1 Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003677 GO:0005634 -

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

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