19289 (Tp_CBF/NF3) CBFD_NFYB_HMF
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
19289 chr_20 (Tp_CBF/NF3) CBFD_NFYB_HMF 144353 144769 + CBFD_NFYB_HMF

Synonyms

NCBI ID Ensembl Genomes exon ID
7447822 Thaps19289.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0417

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0275
 0.38

Most Highly Correlated Transcripts

bd877

(bd877) NA
0.9511

bd643

(bd643) NA
0.8825

bd1849

(bd1849) NA
0.8741

plastid_psb28

0.8603

263599

COG3899
0.8568

bd410

(bd410) HNHc
0.8563

bd690

(bd690) NA
0.8483

bd415

(bd415) arom_aa_hydroxylase superfamily
0.844

10539

hypothetical protein
0.8386

bd1840

(bd1840) NA
0.836

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
CBFD_NFYB_HMF Histone-like transcription factor (CBF/NF-Y) and archaeal histone; This family includes... cl00074 96.9111 5.31E-27 5 - 70 specific 250147
H4 superfamily Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic... - 96.9111 5.31E-27 5 - 70 superfamily 260174

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_54067 PHATRDRAFT_54067 267774 205229 256109 Cre02.g079200.t1.2 AT4G14540.1 476521

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003677 GO:0005634 GO:0006355 GO:0003887 GO:0003889 GO:0003890 GO:0003891 GO:0003893 GO:0003894 GO:0003895 GO:0015999 GO:0016000 GO:0016448 GO:0016449 GO:0016450 GO:0016451 GO:0016452 GO:0019984 -

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0006355

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP

GO:0003887

DNA-directed DNA polymerase activity

Details: 
Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1); the synthesis of DNA from deoxyribonucleotide triphosphates in the presence of a DNA template and primer.
GO Category: 
MF

GO:0003889

NA

Details: 
NA
GO Category: 
NA

GO:0003890

NA

Details: 
NA
GO Category: 
NA

GO:0003891

NA

Details: 
NA
GO Category: 
NA

GO:0003893

NA

Details: 
NA
GO Category: 
NA

GO:0003894

NA

Details: 
NA
GO Category: 
NA

GO:0003895

NA

Details: 
NA
GO Category: 
NA

GO:0015999

NA

Details: 
NA
GO Category: 
NA

GO:0016000

NA

Details: 
NA
GO Category: 
NA

GO:0016448

NA

Details: 
NA
GO Category: 
NA

GO:0016449

NA

Details: 
NA
GO Category: 
NA

GO:0016450

NA

Details: 
NA
GO Category: 
NA

GO:0016451

NA

Details: 
NA
GO Category: 
NA

GO:0016452

NA

Details: 
NA
GO Category: 
NA

GO:0019984

NA

Details: 
NA
GO Category: 
NA

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