19793 PLN00157
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
19793 chr_5 PLN00157 1960231 1960632 + PLN00157

Synonyms

NCBI ID Ensembl Genomes exon ID
7442271 Thaps19793.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0082

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0222
 0.32

Most Highly Correlated Transcripts

34210

PLN00158
0.9344

bd950

(bd950) NA
0.9224

bd211

(bd211) Maf_Ham1 superfamily
0.9163

bd1983

(bd1983) RecA-like_NTPases superfamily
0.9113

4607

hypothetical protein
0.9111

8031

DUF1028 superfamily
0.8986

bd439

(bd439) POLBc_alpha
0.8985

1393

(CAP1) Smc
0.8949

370

(RIR1_1) PLN02437
0.8942

bd758

(bd758) NA
0.8913

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
H2A superfamily Histone 2A; H2A is a subunit of the nucleosome. The nucleosome is an octamer containing two H2A,... - 197.172 1.23E-65 15 - 119 superfamily 238029
H2A superfamily Histone 2A; H2A is a subunit of the nucleosome. The nucleosome is an octamer containing two H2A,... - 197.172 1.23E-65 15 - 119 superfamily 238029
PLN00157 histone H2A; Provisional - 208.936 5.50E-70 14 - 130 multi-dom 177758

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available 246619 Not available Cre13.g591150.t1.2 Not available 322459

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0000786 GO:0003677 GO:0005634 GO:0006334 GO:0007001 -

GO:0000786

nucleosome

Details: 
A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures.
GO Category: 
CC

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0006334

nucleosome assembly

Details: 
The aggregation, arrangement and bonding together of a nucleosome, the beadlike structural units of eukaryotic chromatin composed of histones and DNA.
GO Category: 
BP

GO:0007001

NA

Details: 
NA
GO Category: 
NA

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