20622 PRK11728 superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
20622 chr_1 PRK11728 superfamily 444023 445298 + PRK11728 superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7449728 Thaps20622.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0142

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0280
 0.36

Most Highly Correlated Transcripts

19435

PTZ00184
0.9086

5038

DUF179
0.9067

26769

ERG4_ERG24 superfamily
0.9049

7469

hypothetical protein
0.9036

261400

NA
0.9032

260816

DAGK_acc superfamily
0.9016

32139

hypothetical protein
0.898

3500

hypothetical protein
0.8956

15819

Arginase_HDAC superfamily
0.8913

42646

PRK04342
0.8892

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PRK11728 superfamily hydroxyglutarate oxidase; Provisional - 191.959 2.22E-56 16 - 408 superfamily 267509
DAO FAD dependent oxidoreductase; This family includes various FAD dependent oxidoreductases: Glycerol-... - 162.912 2.94E-46 16 - 410 multi-dom 250489

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_41947 PHATRDRAFT_41947 242728 240482 61689 Cre13.g574150.t1.1 AT3G56840.1 248743

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0006118 GO:0016491 GO:0019145 -

GO:0006118

NA

Details: 
NA
GO Category: 
NA

GO:0016491

oxidoreductase activity

Details: 
Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO Category: 
MF

GO:0019145

aminobutyraldehyde dehydrogenase activity

Details: 
Catalysis of the reaction: 4-aminobutanal + NAD+ + H2O = 4-aminobutanoate + NADH + 2 H+.
GO Category: 
MF

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