20998 HOOKThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
20998	chr_1	HOOK	2457737	2459709	+	HOOK

Synonyms

NCBI ID	Ensembl Genomes exon ID
7449066	Thaps20998.1, Thaps20998.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0113

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0291	0.48	30000 2800

Most Highly Correlated Transcripts

21734 DnaJ-X superfamily 0.9147	268881 Mod_r superfamily 0.9092	270222 0.8864	2674 hypothetical protein 0.8798	31845 PLN02428 0.8774	1428 hypothetical protein 0.8632
20993 hslU 0.8627	31034 cyclophilin superfamily 0.8602	39157 (RPT2) PTZ00361 0.8581	23148 PUB 0.8567

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
HOOK		HOOK protein; This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic...	-	113.74		19 - 554	multi-dom	253283

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_45285	PHATRDRAFT_45285	178655	264418	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0005509 GO:0003700 GO:0006355 GO:0008570 -

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