21513 (Tp_HSF_4.7c) HSF_DNA-bind superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
21513 chr_2 (Tp_HSF_4.7c) HSF_DNA-bind superfamily 2169672 2171764 + HSF_DNA-bind superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7450428 Thaps21513.1, Thaps21513.2, Thaps21513.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0392

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0034
 0.54

Most Highly Correlated Transcripts

bd737

(bd737) NA
0.8342

bd735

(bd735) NA
0.8186

20778

(Tp_TAZ6) zf-TAZ
0.8065

21411

hypothetical protein
0.7993

bd833

(bd833) NA
0.7987

8143

hypothetical protein
0.7963

29322

AAT_I superfamily
0.796

20595

Choline_transpo
0.7932

25656

Lactonase
0.7907

bd1890

(bd1890) NA
0.7854

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
HSF_DNA-bind superfamily HSF-type DNA-binding; HSF-type DNA-binding. - 79.4662 3.95E-18 81 - 150 superfamily 264552

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
42971 Not available 211989 238673 65763 Cre07.g350500.t1.2 Not available 314768

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003700 GO:0005634 GO:0006355 GO:0003677 -

GO:0003700

sequence-specific DNA binding transcription factor activity

Details: 
Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
GO Category: 
MF

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0006355

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

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