21576 hypothetical protein
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
21576 chr_2 hypothetical protein 2623982 2626848 - hypothetical protein

Synonyms

NCBI ID Ensembl Genomes exon ID
7452135 Thaps21576.4, Thaps21576.1, Thaps21576.2, Thaps21576.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0334

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0095
 0.37

Most Highly Correlated Transcripts

22277

RdRP
0.8574

bd1839

(bd1839) NA
0.8547

bd1756

(bd1756) NA
0.8525

21645

hypothetical protein
0.8456

25525

hypothetical protein
0.8359

7372

Tryp_SPc
0.8356

9222

COG3899
0.8345

23895

hypothetical protein
0.8344

6295

hypothetical protein
0.825

25223

SNF2_N
0.8235

Conserved Domains

Not available

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004844 GO:0016799 GO:0017065 GO:0019104 -

GO:0004844

uracil DNA N-glycosylase activity

Details: 
Catalysis of the cleavage of the N-C1' glycosidic bond between the damaged DNA base and the deoxyribose sugar, releasing a free base and leaving an apyrimidinic (AP) site. Enzymes with this activity recognize and remove uracil bases in DNA that result from the deamination of cytosine or the misincorporation of dUTP opposite an adenine.
GO Category: 
MF

GO:0016799

hydrolase activity, hydrolyzing N-glycosyl compounds

Details: 
Catalysis of the hydrolysis of any N-glycosyl bond.
GO Category: 
MF

GO:0017065

single-strand selective uracil DNA N-glycosylase activity

Details: 
Catalysis of the cleavage of the N-C1' glycosidic bond between the damaged DNA base and the deoxyribose sugar, releasing a free base and leaving an apyrimidinic (AP) site. Enzymes with this activity recognize and remove uracil bases present in single-stranded DNA.
GO Category: 
MF

GO:0019104

DNA N-glycosylase activity

Details: 
Catalysis of the removal of damaged bases by cleaving the N-C1' glycosidic bond between the target damaged DNA base and the deoxyribose sugar. The reaction releases a free base and leaves an apurinic/apyrimidinic (AP) site.
GO Category: 
MF

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