9222 COG3899Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
9222	chr_12	COG3899	895704	899852	+	COG3899

Synonyms

NCBI ID	Ensembl Genomes exon ID
7448014	Thaps9222.1, Thaps9222.4, Thaps9222.2, Thaps9222.3

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0332

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0135	0.41	0.085 580

Most Highly Correlated Transcripts

22071 Ion_trans 0.8939	21122 Nipped-B_C 0.8778	6922 hypothetical protein 0.8717	22764 hypothetical protein 0.8692	4047 hypothetical protein 0.8658	25079 hypothetical protein 0.8642
23754 hypothetical protein 0.8605	20666 RabGAP-TBC 0.8584	6292 hypothetical protein 0.8584	10753 hypothetical protein 0.8563

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
AAA_16		AAA ATPase domain; This family of domains contain a P-loop motif that is characteristic of the AAA...	cl18944	61.7097	7.45E-11	287 - 501	specific	257559
AAA superfamily		The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an...	-	61.7097	7.45E-11	287 - 501	superfamily	267297
COG3899		Predicted ATPase [General function prediction only]	-	219.192	3.99E-59	287 - 1091	multi-dom	226415

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0005489 GO:0005507 GO:0006118 -

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