21692 Pyrid_oxidase_2Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
21692	chr_3	Pyrid_oxidase_2	652773	653988	+	Pyrid_oxidase_2

Synonyms

NCBI ID	Ensembl Genomes exon ID
7444075	Thaps21692.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0001

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0148	0.34	0.028 0.13

Most Highly Correlated Transcripts

261608 PLN02585 0.9478	269147 NAD_binding_8 superfamily 0.9321	5240 ALAD_PBGS_aspartate_rich 0.9237	6155 hypothetical protein 0.9181	268480 (GGPS1) Trans_IPPS_HT 0.9058	263658 GUN4 0.9042
28125 PLN00203 0.9027	262279 PT_UbiA_chlorophyll 0.9014	575 PRK00062 0.8996	36235 p450 superfamily 0.8988

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Pyrid_oxidase_2 superfamily		Pyridoxamine 5'-phosphate oxidase; Pyridoxamine 5'-phosphate oxidase.	-	169.711	3.80E-51	62 - 226	superfamily	258150
Pyrid_oxidase_2 superfamily		Pyridoxamine 5'-phosphate oxidase; Pyridoxamine 5'-phosphate oxidase.	-	169.711	3.80E-51	62 - 226	superfamily	258150

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_54952	PHATRDRAFT_54952	167870	319810	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

Add comment

Log in to post comments