21811 UBCcThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
21811	chr_3	UBCc	1254065	1255349	-	UBCc

Synonyms

NCBI ID	Ensembl Genomes exon ID
7441900	Thaps21811.1, Thaps21811.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0218

Most Highly Correlated Transcripts

39141 RHOD superfamily 0.92	23024 hypothetical protein 0.9182	22958 hypothetical protein 0.9155	37934 GRX_PICOT_like 0.9147	8041 hypothetical protein 0.9146	37920 cyclophilin_ABH_like 0.9097
35642 hypothetical protein 0.9096	41697 TRX_family 0.909	11848 hypothetical protein 0.907	42380 RRM_ist3_like 0.9065

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
UBCc		Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated...	cl00154	170.461	2.46E-54	10 - 154	specific	238117
UBCc superfamily		Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated...	-	170.461	2.46E-54	10 - 154	superfamily	260221

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_27762	PHATRDRAFT_27762	269014	260432	471004	Cre02.g142000.t1.2	AT3G57870.1	511002

KEGG

KEGG description	KEGG Pathway
Ubiquitin mediated proteolysis	map04120

GO Terms

GO:0004840 GO:0006464 GO:0006512 GO:0004842 -

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