21832 2OG-FeII_Oxy_2Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
21832	chr_3	2OG-FeII_Oxy_2	1351142	1353353	-	2OG-FeII_Oxy_2

Synonyms

NCBI ID	Ensembl Genomes exon ID
7441926	Thaps21832.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0253

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0040	0.39	0.032 0.41

Most Highly Correlated Transcripts

11589 SpoVK 0.8931	bd1221 (bd1221) recQ_fam 0.8706	35713 hypothetical protein 0.8607	38652 PI-PLCc_eukaryota 0.859	261179 Myotub-related 0.8582	10975 hypothetical protein 0.8541
262103 C2_PLC_like 0.8526	261734 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_ 0.8521	20620 Nucleoporin_C superfamily 0.8455	23450 hypothetical protein 0.8449

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
2OG-FeII_Oxy_2		2OG-Fe(II) oxygenase superfamily; 2OG-Fe(II) oxygenase superfamily.	cl17321	100.04	3.40E-24	231 - 424	specific	257851
2OG-FeII_Oxy_2 superfamily		2OG-Fe(II) oxygenase superfamily; 2OG-Fe(II) oxygenase superfamily.	-	100.04	3.40E-24	231 - 424	superfamily	266627

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	162731	5958	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

Add comment

Log in to post comments