22313 CAP_ED
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
22313 chr_4 CAP_ED 1348636 1350537 + CAP_ED

Synonyms

NCBI ID Ensembl Genomes exon ID
7446121 Thaps22313.2, Thaps22313.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0353

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0017
 0.42

Most Highly Correlated Transcripts

bd1267

(bd1267) rpoB
0.8177

bd1069

(bd1069) NA
0.7971

bd668

(bd668) NA
0.7947

bd1023

(bd1023) atpD
0.7782

bd2063

(bd2063) NA
0.7756

bd997

(bd997) rpoC1
0.7669

bd1221

(bd1221) recQ_fam
0.7623

bd1013

(bd1013) PRX_Typ2cys
0.7606

bd875

(bd875) NA
0.7589

263581

2a58
0.7544

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor... cl00047 86.6109 4.20E-20 428 - 544 specific 237999
CAP_ED superfamily effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor... - 86.6109 4.20E-20 428 - 544 superfamily 260155
Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein... - 69.0899 1.57E-13 422 - 551 multi-dom 223736

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Cre17.g706900.t1.2 AT5G57940.2 500078

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005216 GO:0006811 GO:0016020 -

GO:0005216

ion channel activity

Details: 
Catalysis of facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism.
GO Category: 
MF

GO:0006811

ion transport

Details: 
The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO Category: 
BP

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

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