22511 Delta9-FADS-like
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
22511 chr_5 Delta9-FADS-like 15666 16917 + Delta9-FADS-like

Synonyms

NCBI ID Ensembl Genomes exon ID
7447231 Thaps22511.2, Thaps22511.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0021

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0092
 0.42

Most Highly Correlated Transcripts

bd1527

(bd1527) Delta9-FADS-like
1

270373

hypothetical protein
0.893

38608

SDR_a5
0.8871

270343

hypothetical protein
0.8806

270213

(Hlip2) high light induced protein 2
0.8773

16075

tpt
0.8752

261882

Thioredoxin_like superfamily
0.8718

268592

VDE superfamily
0.8692

263714

LPLAT_GPAT
0.8684

31169

PRX_BCP
0.8669

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Delta9-FADS-like The Delta9 Fatty Acid Desaturase (Delta9-FADS)-like CD includes the delta-9 and delta-11 acyl CoA... cl00615 212.031 1.63E-67 50 - 292 specific 239582
Membrane-FADS-like superfamily The membrane fatty acid desaturase (Membrane_FADS)-like CD includes membrane FADSs, alkane... - 212.031 1.63E-67 50 - 292 superfamily 260534

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_28797 PHATRDRAFT_28797 175400 185884 444084 Cre09.g397250.t1.2 AT3G15850.1 318624

KEGG

KEGG description KEGG Pathway
Biosynthesis of unsaturated fatty acids map01040

GO Terms

GO:0004768 GO:0005506 GO:0005783 GO:0006633 GO:0016020 GO:0016491 -

GO:0004768

stearoyl-CoA 9-desaturase activity

Details: 
Catalysis of the reaction: stearoyl-CoA + 2 ferrocytochrome b5 + O2 + 2 H+ = oleoyl-CoA + 2 ferricytochrome b5 + H2O.
GO Category: 
MF

GO:0005506

iron ion binding

Details: 
Interacting selectively and non-covalently with iron (Fe) ions.
GO Category: 
MF

GO:0005783

endoplasmic reticulum

Details: 
The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached).
GO Category: 
CC

GO:0006633

fatty acid biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes.
GO Category: 
BP

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

GO:0016491

oxidoreductase activity

Details: 
Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO Category: 
MF

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