22770 PLN02908
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
22770 chr_5 PLN02908 1336210 1339071 - PLN02908

Synonyms

NCBI ID Ensembl Genomes exon ID
7453195 Thaps22770.2, Thaps22770.1, Thaps22770.4, Thaps22770.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0200

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0279
 0.39

Most Highly Correlated Transcripts

268062

PRK14293
0.9227

38964

Chorismate_synthase
0.9105

36525

PRK09427
0.9093

4524

DHQS
0.8983

21710

Pho88 superfamily
0.8929

264295

PP2Cc
0.8915

42612

pdxS
0.878

4111

TENA_THI-4 superfamily
0.8771

42704

(LEU2) IPMI
0.8765

262136

Tim44 superfamily
0.8707

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain. ThrRS is a homodimer. It is... cl00268 482.435 4.59E-165 392 - 694 specific 238394
class_II_aaRS-like_core superfamily Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA... - 482.435 4.59E-165 392 - 694 superfamily 260313
ThrRS_anticodon ThrRS Threonyl-anticodon binding domain. ThrRS belongs to class II aminoacyl-tRNA synthetases (aaRS... cl00266 114.908 4.97E-30 694 - 784 specific 238437
HGTP_anticodon superfamily HGTP anticodon binding domain, as found at the C-terminus of histidyl, glycyl, threonyl and prolyl... - 114.908 4.97E-30 694 - 784 superfamily 260312
tRNA_SAD Threonyl and Alanyl tRNA synthetase second additional domain; The catalytically active from of... cl08469 59.3998 4.55E-11 321 - 369 specific 254556
tRNA_SAD superfamily Threonyl and Alanyl tRNA synthetase second additional domain; The catalytically active from of... - 59.3998 4.55E-11 321 - 369 superfamily 263673
PLN02908 threonyl-tRNA synthetase - 1246.58 0 49 - 791 multi-dom 178496

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATR_18524 PHATR_18524 231803 261982 74837 Cre06.g273300.t1.2 AT5G26830.1 551631

KEGG

KEGG description KEGG Pathway
Aminoacyl-tRNA biosynthesis map00970

GO Terms

GO:0004812 GO:0005524 GO:0006418 GO:0004829 GO:0006435 GO:0006412 -

GO:0004812

aminoacyl-tRNA ligase activity

Details: 
Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.
GO Category: 
MF

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0006418

tRNA aminoacylation for protein translation

Details: 
The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis.
GO Category: 
BP

GO:0004829

threonine-tRNA ligase activity

Details: 
Catalysis of the reaction: ATP + L-threonine + tRNA(Thr) = AMP + diphosphate + L-threonyl-tRNA(Thr).
GO Category: 
MF

GO:0006435

threonyl-tRNA aminoacylation

Details: 
The process of coupling threonine to threonyl-tRNA, catalyzed by threonyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.
GO Category: 
BP

GO:0006412

translation

Details: 
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome.
GO Category: 
BP

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