42612 pdxS
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
42612 chr_16b pdxS 129889 131520 - pdxS

Synonyms

NCBI ID Ensembl Genomes exon ID
7442586 Thaps42612.2, Thaps42612.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0291

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0279
 0.39

Most Highly Correlated Transcripts

270365

hypothetical protein
0.9213

269616

PLN03127
0.9024

42226

PLN03233
0.8991

22770

PLN02908
0.878

21258

DUF3523
0.8758

40233

(Tp_CSF3) CSP_CDS
0.863

32140

DHDPS
0.8611

bd1515

(bd1515) Adenylsuccinate_lyase_2
0.8565

22293

PLN00178
0.8476

268062

PRK14293
0.8457

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in... cl17186 510.636 0 23 - 291 specific 240078
TIM_phosphate_binding superfamily TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an... - 510.636 0 23 - 291 superfamily 266538

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
10417 PHATRDRAFT_29885 PHATRDRAFT_29885 268607 180967 426056 Cre15.g643550.t1.2 AT5G01410.1 354828

KEGG

KEGG description KEGG Pathway
Vitamin B6 metabolism map00750

GO Terms

GO:0005554 GO:0016829 GO:0051339 -

GO:0005554

NA

Details: 
NA
GO Category: 
NA

GO:0016829

lyase activity

Details: 
Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
GO Category: 
MF

GO:0051339

regulation of lyase activity

Details: 
Any process that modulates the frequency, rate or extent of lyase activity, the catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
GO Category: 
BP

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