25022 AFD_class_I superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
25022 chr_15 AFD_class_I superfamily 556831 558719 - AFD_class_I superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7443938 Thaps25022.3, Thaps25022.1, Thaps25022.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0211

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0131
 0.35

Most Highly Correlated Transcripts

25042

AFD_class_I superfamily
0.9586

270222

0.9084

22820

Choline_transpo
0.9065

262313

Chloroa_b-bind superfamily
0.8993

34187

(ACAS2) PRK00174
0.884

269147

NAD_binding_8 superfamily
0.8822

8031

DUF1028 superfamily
0.8767

5098

hypothetical protein
0.8748

32723

Chloroa_b-bind
0.8717

28334

(GAPD4) PTZ00023
0.8588

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
AFD_class_I superfamily Adenylate forming domain, Class I; This family includes acyl- and aryl-CoA ligases, as well as the... - 687.457 0 42 - 548 superfamily 266508
FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism] - 421.341 8.20E-140 46 - 558 multi-dom 223953

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 259065 Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003824 GO:0008152 GO:0004467 -

GO:0003824

catalytic activity

Details: 
Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO Category: 
MF

GO:0008152

metabolic process

Details: 
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO Category: 
BP

GO:0004467

long-chain fatty acid-CoA ligase activity

Details: 
Catalysis of the reaction: ATP + a long-chain carboxylic acid + CoA = AMP + diphosphate + an acyl-CoA; a long-chain fatty acid is a fatty acid with a chain length between C13 and C22.
GO Category: 
MF

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