22830 Choline_transpoThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
22830	chr_5	Choline_transpo	1629195	1631327	+	Choline_transpo

Synonyms

NCBI ID	Ensembl Genomes exon ID
7445189	Thaps22830.3, Thaps22830.1, Thaps22830.4, Thaps22830.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0113

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0121	0.36	0.06 0.000047

Most Highly Correlated Transcripts

270222 0.9213	23973 BT1 0.8791	8038 hypothetical protein 0.8772	2145 hypothetical protein 0.867	37596 SpoT 0.8653	263883 hypothetical protein 0.8595
22846 hypothetical protein 0.8529	5584 P4Hc 0.8488	22963 WD40 superfamily 0.8483	3837 UshA 0.848

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Choline_transpo superfamily		Plasma-membrane choline transporter; This family represents a high-affinity plasma-membrane choline...	-	215.543	2.72E-64	258 - 571	superfamily	252644
Choline_transpo superfamily		Plasma-membrane choline transporter; This family represents a high-affinity plasma-membrane choline...	-	215.543	2.72E-64	258 - 571	superfamily	252644

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	198025	Not available	218831	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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