37596 SpoT
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
37596 chr_15 SpoT 858542 861718 + SpoT

Synonyms

NCBI ID Ensembl Genomes exon ID
7450314 Thaps37596.1, Thaps37596.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0113

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0025
 0.38

Most Highly Correlated Transcripts

34191

CobN_like
0.9505

bd1449

(bd1449) SpoT
0.8971

20846

LPLAT_MGAT-like
0.8925

22097

hypothetical protein
0.8916

2145

hypothetical protein
0.888

20920

S2P-M50_like_2
0.8838

7597

2A0111
0.8791

23651

hypothetical protein
0.8774

25944

p450 superfamily
0.8748

2575

RIO superfamily
0.8739

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
NT_Rel-Spo_like Nucleotidyltransferase (NT) domain of RelA- and SpoT-like ppGpp synthetases and hydrolases; This... cl11966 132.471 1.84E-35 530 - 630 specific 143389
Rel-Spo_like superfamily RelA- and SpoT-like ppGpp Synthetases and Hydrolases, catalytic domain; The Rel-Spo superfamily... - 132.471 1.84E-35 530 - 630 superfamily 264491
TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a... cl15768 99.5061 1.11E-24 688 - 747 specific 133438
TGS superfamily The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is... - 99.5061 1.11E-24 688 - 747 superfamily 265779
ACT_4 ACT domain; ACT domains bind to amino acids and regulate associated enzyme domains. These ACT... cl09141 65.6342 8.69E-13 957 - 1030 specific 257632
ACT superfamily ACT domains are commonly involved in specifically binding an amino acid or other small ligand... - 65.6342 8.69E-13 957 - 1030 superfamily 263730
SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms /... - 752.16 0 288 - 1030 multi-dom 223394

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
25484 Not available 205946 195658 Not available Not available Not available 509187

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0008152 GO:0016597 GO:0003824 GO:0015969 -

GO:0008152

metabolic process

Details: 
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO Category: 
BP

GO:0016597

amino acid binding

Details: 
Interacting selectively and non-covalently with an amino acid, organic acids containing one or more amino substituents.
GO Category: 
MF

GO:0003824

catalytic activity

Details: 
Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO Category: 
MF

GO:0015969

guanosine tetraphosphate metabolic process

Details: 
The chemical reactions and pathways involving guanine tetraphosphate (5'-ppGpp-3'), a derivative of guanine riboside with four phosphates.
GO Category: 
BP

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