22889 HMGB-UBF_HMG-box
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
22889 chr_5 HMGB-UBF_HMG-box 1949196 1951141 - HMGB-UBF_HMG-box

Synonyms

NCBI ID Ensembl Genomes exon ID
7442268 Thaps22889.1, Thaps22889.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0474

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0198
 0.40

Most Highly Correlated Transcripts

264653

COG3899
0.8589

12899

AAA
0.8569

21633

ccl1
0.8471

23660

hypothetical protein
0.8468

21307

hypothetical protein
0.8467

14719

AarF
0.8432

23894

hypothetical protein
0.8428

25137

hypothetical protein
0.8424

25442

hypothetical protein
0.8423

9571

(Tp_HSF_3.2i) HSF_DNA-bind
0.8399

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins.... cl00082 62.6453 2.38E-12 380 - 489 specific 238686
HMG-box superfamily High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and... - 62.6453 2.38E-12 380 - 489 superfamily 260179

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003677 GO:0006355 -

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0006355

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP

Add comment

Log in to post comments