22991 DUF2040Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
22991	chr_6	DUF2040	379035	381263	+	DUF2040

Synonyms

NCBI ID	Ensembl Genomes exon ID
7448419	Thaps22991.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0240

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0019	0.40	0.000000047 0.0044

Most Highly Correlated Transcripts

4108 hypothetical protein 0.864	36641 Aldolase_Class_I superfamily 0.8354	bd1756 (bd1756) NA 0.8273	bd1840 (bd1840) NA 0.8204	42194 PTZ00184 0.8202	bd1839 (bd1839) NA 0.8125
22508 hypothetical protein 0.811	263880 PRK12267 0.808	32108 hypothetical protein 0.8028	4330 DUF2256 0.8021

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
DUF2040 superfamily		Coiled-coil domain-containing protein 55 (DUF2040); This entry is a conserved domain of...	-	78.9874	2.53E-18	67 - 200	superfamily	255526
DUF2040 superfamily		Coiled-coil domain-containing protein 55 (DUF2040); This entry is a conserved domain of...	-	78.9874	2.53E-18	67 - 200	superfamily	255526

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_35763	PHATRDRAFT_35763	235904	173765	Not available	Cre17.g734000.t1.2	AT2G27285.1	504629

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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