23102 TCP1_epsilonThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
23102	chr_6	TCP1_epsilon	867878	870048	+	TCP1_epsilon

Synonyms

NCBI ID	Ensembl Genomes exon ID
7443622	Thaps23102.3, Thaps23102.2, Thaps23102.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0239

Most Highly Correlated Transcripts

268443 SAICAR_synt_Sc 0.9187	36007 Aldolase_II superfamily 0.9055	3959 KPHMT-like 0.9033	38149 Acatn superfamily 0.9017	32216 (RT5) rpsE_bact 0.8983	40200 TRX_reduct 0.8983
268296 (RM12) Ribosomal_L7_L12 0.8968	6028 NA 0.8946	267979 HCO3_cotransp superfamily 0.8908	268859 (GGTB1) PLN03201 0.8901

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
TCP1_epsilon		TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in...	cl02777	983.328	0	6 - 537	specific	239455
chaperonin_like superfamily		chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share...	-	983.328	0	6 - 537	superfamily	261443

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_21430	PHATRDRAFT_21430	259523	290997	418001	Cre03.g156750.t1.2	AT1G24510.2	566801

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0005515 GO:0005524 GO:0044267 GO:0003763 -

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