23224 PAP2_CThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
23224	chr_6	PAP2_C	1491869	1493852	-	PAP2_C

Synonyms

NCBI ID	Ensembl Genomes exon ID
7442747	Thaps23224.1, Thaps23224.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0351

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0008	0.44	0.00078 37000

Most Highly Correlated Transcripts

35229 H4 0.8459	12899 AAA 0.8052	10037 hypothetical protein 0.803	264344 PDEase_I 0.8017	10518 hypothetical protein 0.8004	7839 7tm_3 0.7917
5604 hypothetical protein 0.7888	22183 hypothetical protein 0.7873	10811 EEP superfamily 0.784	8287 hypothetical protein 0.7837

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
PAP2_C superfamily		PAP2 superfamily C-terminal; This family is closely related to the C-terminal a region of PAP2.	-	98.4029	8.21E-25	431 - 502	superfamily	258532
PAP2_C superfamily		PAP2 superfamily C-terminal; This family is closely related to the C-terminal a region of PAP2.	-	98.4029	8.21E-25	431 - 502	superfamily	258532

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
12960		Not available	Not available	Not available	Not available	Cre06.g249800.t1.2	AT2G29525.3	469105

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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