23261 (Tp_fungal_TRF1a) regulator [Rayko]
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
23261 chr_6 (Tp_fungal_TRF1a) regulator [Rayko] 1666529 1668504 - regulator [Rayko]

Synonyms

NCBI ID Ensembl Genomes exon ID
7442780 Thaps23261.2, Thaps23261.1, Thaps23261.4, Thaps23261.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0405

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0013
 0.47

Most Highly Correlated Transcripts

6192

hypothetical protein
0.8905

37409

vWFA superfamily
0.8839

30149

Solute_trans_a
0.8705

25041

hypothetical protein
0.8687

262720

sensory_box
0.8652

4551

hypothetical protein
0.8579

18434

PIPKc superfamily
0.8475

261357

NAD_binding_8 superfamily
0.8434

261541

RRM3_CELF1-6
0.8429

27048

TM_PBP1_branched-chain-AA_like superfamily
0.8419

Conserved Domains

Not available

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003700 GO:0005634 GO:0006355 GO:0008270 -

GO:0003700

sequence-specific DNA binding transcription factor activity

Details: 
Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
GO Category: 
MF

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0006355

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP

GO:0008270

zinc ion binding

Details: 
Interacting selectively and non-covalently with zinc (Zn) ions.
GO Category: 
MF

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