23311 Vps53_N superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
23311 chr_6 Vps53_N superfamily 1906451 1910107 + Vps53_N superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7446354 Thaps23311.1, Thaps23311.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0163

Most Highly Correlated Transcripts

12836

EEP superfamily
0.9146

bd1815

(bd1815) NA
0.8848

8535

hypothetical protein
0.864

11441

hypothetical protein
0.8627

22265

hypothetical protein
0.8616

22138

Sec3_C superfamily
0.8606

6459

Spc97_Spc98
0.8587

2742

DUF1336 superfamily
0.8585

2581

hypothetical protein
0.8582

262352

MIF4G
0.8556

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Vps53_N superfamily Vps53-like, N-terminal; Vps53 complexes with Vps52 and Vps54 to form a multi- subunit complex... - 165.73 3.21E-44 105 - 480 superfamily 252372

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_32759 PHATRDRAFT_32759 187464 256984 464856 Cre06.g259600.t1.1 AT1G50500.1 253106

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

Not available -

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