23327 CAP10 superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
23327	chr_6	CAP10 superfamily	2027241	2028885	+	CAP10 superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7446571	Thaps23327.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0437

Most Highly Correlated Transcripts

1873 hypothetical protein 0.8784	23979 zf-HC5HC2H superfamily 0.8761	21997 TPR_12 0.8577	9265 hypothetical protein 0.8549	12183 hypothetical protein 0.8536	262616 (MYB22) 0.8534
22918 hypothetical protein 0.8525	4565 hypothetical protein 0.8516	12836 EEP superfamily 0.8515	5519 hypothetical protein 0.8492

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
CAP10 superfamily		Putative lipopolysaccharide-modifying enzyme; Putative lipopolysaccharide-modifying enzyme.	-	65.9062	2.12E-12	424 - 538	superfamily	214773

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

Add comment

Log in to post comments