2335 (Tp_CXC4) TCR
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
2335 chr_2 (Tp_CXC4) TCR 740820 744625 + TCR

Synonyms

NCBI ID Ensembl Genomes exon ID
7446510 Thaps2335.3, Thaps2335.1, Thaps2335.2, Thaps2335.4

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0373

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0078
 0.42

Most Highly Correlated Transcripts

bd668

(bd668) NA
0.9057

bd718

(bd718) PRK10387
0.8745

bd2073

(bd2073) psbB
0.8731

bd843

(bd843) NA
0.8712

bd439

(bd439) POLBc_alpha
0.8626

bd1387

(bd1387) psbE
0.8533

bd1893

(bd1893) NA
0.853

bd624

(bd624) Glyco_transf_34 superfamily
0.8523

bd463

(bd463) Aa_trans superfamily
0.8502

bd950

(bd950) NA
0.8485

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
TCR superfamily Tesmin/TSO1-like CXC domain, cysteine-rich domain; This family includes proteins that have two... - 73.8338 8.52E-16 862 - 895 superfamily 202712
TCR superfamily Tesmin/TSO1-like CXC domain, cysteine-rich domain; This family includes proteins that have two... - 73.8338 8.52E-16 862 - 895 superfamily 202712
TCR superfamily Tesmin/TSO1-like CXC domain, cysteine-rich domain; This family includes proteins that have two... - 73.8338 8.52E-16 862 - 895 superfamily 202712
TCR superfamily Tesmin/TSO1-like CXC domain, cysteine-rich domain; This family includes proteins that have two... - 73.8338 8.52E-16 862 - 895 superfamily 202712

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 195902 106459 237965 Cre08.g361400.t1.2 AT2G20110.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0008766 GO:0016881 GO:0018169 -

GO:0008766

UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanine ligase activity

Details: 
Catalysis of the reaction: ATP + UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminoheptanedioate + D-alanyl-D-alanine = ADP + phosphate + UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysyl-D-alanyl-D-alanine.
GO Category: 
MF

GO:0016881

acid-amino acid ligase activity

Details: 
Catalysis of the ligation of an acid to an amino acid via a carbon-nitrogen bond, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.
GO Category: 
MF

GO:0018169

ribosomal S6-glutamic acid ligase activity

Details: 
Catalysis of the posttranslational transfer of one or more glutamic acid residues to the C-terminus of ribosomal protein S6.
GO Category: 
MF

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