23399 PTZ00184
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
23399 chr_7 PTZ00184 545649 546527 + PTZ00184

Synonyms

NCBI ID Ensembl Genomes exon ID
7446236 Thaps23399.3, Thaps23399.2, Thaps23399.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0208

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0131
 0.35

Most Highly Correlated Transcripts

37934

GRX_PICOT_like
0.9288

2669

MmsB
0.9245

26991

GRX_GRXh_1_2_like
0.9238

22171

hypothetical protein
0.919

39278

ATP-synt_C
0.9152

263742

Synaptobrevin
0.915

39299

(ARF3) Arf1_5_like
0.914

9459

Thioredoxin_like superfamily
0.9131

3119

hypothetical protein
0.9123

36037

Trypsin_2
0.9095

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
EFh superfamily EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal... - 73.3509 8.83E-18 13 - 75 superfamily 238008
EFh superfamily EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal... - 73.3509 8.83E-18 13 - 75 superfamily 238008
EFh superfamily EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal... - 73.3509 8.83E-18 13 - 75 superfamily 238008
EFh superfamily EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal... - 73.3509 8.83E-18 13 - 75 superfamily 238008
PTZ00184 calmodulin; Provisional - 152.993 1.63E-47 6 - 149 multi-dom 185504

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
693 PHATRDRAFT_40998 PHATRDRAFT_40998 265489 286820 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005509 GO:0001539 GO:0009288 -

GO:0005509

calcium ion binding

Details: 
Interacting selectively and non-covalently with calcium ions (Ca2+).
GO Category: 
MF

GO:0001539

ciliary or bacterial-type flagellar motility

Details: 
Cell motility due to movement of cilia or flagella.
GO Category: 
BP

GO:0009288

bacterial-type flagellum

Details: 
A motor complex composed of an extracellular helical protein filament coupled to a rotary motor embedded in the cell envelope.
GO Category: 
CC

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