23500 crypto_DASH
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
23500 chr_7 crypto_DASH 1146582 1148331 + crypto_DASH

Synonyms

NCBI ID Ensembl Genomes exon ID
7447079 Thaps23500.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0319

Most Highly Correlated Transcripts

12899

AAA
0.9286

261916

RING
0.8898

25144

hypothetical protein
0.8889

4772

hypothetical protein
0.8842

21705

hypothetical protein
0.8826

9912

hypothetical protein
0.8816

32782

MPN superfamily
0.8815

1499

(CTS1) PTZ00399
0.881

bd393

(bd393) nst superfamily
0.8793

5760

SART-1
0.8785

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
FAD_binding_7 superfamily FAD binding domain of DNA photolyase; FAD binding domain of DNA photolyase. - 169.352 5.27E-48 298 - 539 superfamily 251955
FAD_binding_7 superfamily FAD binding domain of DNA photolyase; FAD binding domain of DNA photolyase. - 169.352 5.27E-48 298 - 539 superfamily 251955
DNA_photolyase superfamily DNA photolyase; This domain binds a light harvesting cofactor. - 89.9565 7.83E-21 6 - 180 superfamily 250195
DNA_photolyase superfamily DNA photolyase; This domain binds a light harvesting cofactor. - 89.9565 7.83E-21 6 - 180 superfamily 250195
crypto_DASH cryptochrome, DASH family; Photolyases and cryptochromes are related flavoproteins. Photolyases... - 261.924 1.02E-80 6 - 526 multi-dom 234002

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_55091 PHATRDRAFT_55091 183137 285541 247241 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003913 GO:0006281 GO:0003904 -

GO:0003913

DNA photolyase activity

Details: 
Catalysis of the repair of a photoproduct resulting from ultraviolet irradiation of two adjacent pyrimidine residues in DNA.
GO Category: 
MF

GO:0006281

DNA repair

Details: 
The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
GO Category: 
BP

GO:0003904

deoxyribodipyrimidine photo-lyase activity

Details: 
Catalysis of the reaction: cyclobutadipyrimidine (in DNA) = 2 pyrimidine residues (in DNA). This reaction represents the reactivation of irradiated DNA by light.
GO Category: 
MF

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